Department of Mathematics,
University of California San Diego
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Genetics, Bioinformatics, and Systems Biology Colloquium
Christine Heitsch
Georgia Tech
RNA profiling: Extracting structural signals from noisy distributions
Abstract:
Accurate RNA structural prediction remains challenging, despite its increasing biomedical importance. Sampling secondary structures from the Gibbs distribution yields a strong signal of high probability base pairs. However, identifying higher order substructures requires further analysis. Profiling (Rogers & Heitsch, NAR, 2014) is a novel method which identifies the most probable combinations of base pairs across the Boltzmann ensemble. This combinatorial approach is straightforward, stable, and clearly separates structural signal from thermodynamic noise.
Host: Glenn Tesler
April 4, 2019
12:00 PM
Fung Auditorium (PFBH 191)
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